I had to recreate the same issue because you marked it as Not Reproducible before I managed to send you the file
When i import it on cartoon animator the eye (that i changed) doesnt import

https://www.dropbox.com/s/mihadcp2smai3nb/Dummy_Template%20Test.swf?dl=0

I just used the template you sent me, imported it in animate cc , I changed only the eye and nothing else. On the previous example the hair imported but not the eyes.

Thank you